summaryrefslogtreecommitdiff
path: root/rag/storage.go
blob: a53f767d5cf52797828c4c7a11df3dc55dc94af8 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
package rag

import (
	"database/sql"
	"encoding/binary"
	"fmt"
	"gf-lt/models"
	"gf-lt/storage"
	"log/slog"
	"sort"
	"strings"
	"unsafe"

	"github.com/jmoiron/sqlx"
)

// VectorStorage handles storing and retrieving vectors from SQLite
type VectorStorage struct {
	logger *slog.Logger
	sqlxDB *sqlx.DB
	store  storage.FullRepo
}

func NewVectorStorage(logger *slog.Logger, store storage.FullRepo) *VectorStorage {
	return &VectorStorage{
		logger: logger,
		sqlxDB: store.DB(), // Use the new DB() method
		store:  store,
	}
}

// SerializeVector converts []float32 to binary blob
func SerializeVector(vec []float32) []byte {
	buf := make([]byte, len(vec)*4) // 4 bytes per float32
	for i, v := range vec {
		binary.LittleEndian.PutUint32(buf[i*4:], mathFloat32bits(v))
	}
	return buf
}

// DeserializeVector converts binary blob back to []float32
func DeserializeVector(data []byte) []float32 {
	count := len(data) / 4
	vec := make([]float32, count)
	for i := 0; i < count; i++ {
		vec[i] = mathBitsToFloat32(binary.LittleEndian.Uint32(data[i*4:]))
	}
	return vec
}

// mathFloat32bits and mathBitsToFloat32 are helpers to convert between float32 and uint32
func mathFloat32bits(f float32) uint32 {
	return binary.LittleEndian.Uint32((*(*[4]byte)(unsafe.Pointer(&f)))[:4])
}

func mathBitsToFloat32(b uint32) float32 {
	return *(*float32)(unsafe.Pointer(&b))
}

// WriteVector stores an embedding vector in the database
func (vs *VectorStorage) WriteVector(row *models.VectorRow) error {
	tableName, err := vs.getTableName(row.Embeddings)
	if err != nil {
		return err
	}
	embeddingSize := len(row.Embeddings)
	// Start transaction
	tx, err := vs.sqlxDB.Beginx()
	if err != nil {
		return err
	}
	defer func() {
		if err != nil {
			_ = tx.Rollback()
		}
	}()

	// Serialize the embeddings to binary
	serializedEmbeddings := SerializeVector(row.Embeddings)
	query := fmt.Sprintf(
		"INSERT INTO %s (embeddings, slug, raw_text, filename) VALUES (?, ?, ?, ?)",
		tableName,
	)
	if _, err := tx.Exec(query, serializedEmbeddings, row.Slug, row.RawText, row.FileName); err != nil {
		vs.logger.Error("failed to write vector", "error", err, "slug", row.Slug)
		return err
	}
	// Insert into FTS table
	ftsQuery := `INSERT INTO fts_embeddings (slug, raw_text, filename, embedding_size) VALUES (?, ?, ?, ?)`
	if _, err := tx.Exec(ftsQuery, row.Slug, row.RawText, row.FileName, embeddingSize); err != nil {
		vs.logger.Error("failed to write to FTS table", "error", err, "slug", row.Slug)
		return err
	}
	err = tx.Commit()
	if err != nil {
		vs.logger.Error("failed to commit transaction", "error", err)
		return err
	}
	return nil
}

// WriteVectors stores multiple embedding vectors in a single transaction
func (vs *VectorStorage) WriteVectors(rows []*models.VectorRow) error {
	if len(rows) == 0 {
		return nil
	}
	// SQLite has limit of 999 parameters per statement, each row uses 4 parameters
	const maxBatchSize = 200 // 200 * 4 = 800 < 999
	if len(rows) > maxBatchSize {
		// Process in chunks
		for i := 0; i < len(rows); i += maxBatchSize {
			end := i + maxBatchSize
			if end > len(rows) {
				end = len(rows)
			}
			if err := vs.WriteVectors(rows[i:end]); err != nil {
				return err
			}
		}
		return nil
	}
	// All rows should have same embedding size (same model)
	firstSize := len(rows[0].Embeddings)
	for i, row := range rows {
		if len(row.Embeddings) != firstSize {
			return fmt.Errorf("embedding size mismatch: row %d has size %d, expected %d", i, len(row.Embeddings), firstSize)
		}
	}
	tableName, err := vs.getTableName(rows[0].Embeddings)
	if err != nil {
		return err
	}
	// Start transaction
	tx, err := vs.sqlxDB.Beginx()
	if err != nil {
		return err
	}
	defer func() {
		if err != nil {
			_ = tx.Rollback()
		}
	}()

	// Build batch insert for embeddings table
	embeddingPlaceholders := make([]string, 0, len(rows))
	embeddingArgs := make([]any, 0, len(rows)*4)
	for _, row := range rows {
		embeddingPlaceholders = append(embeddingPlaceholders, "(?, ?, ?, ?)")
		embeddingArgs = append(embeddingArgs, SerializeVector(row.Embeddings), row.Slug, row.RawText, row.FileName)
	}
	embeddingQuery := fmt.Sprintf(
		"INSERT INTO %s (embeddings, slug, raw_text, filename) VALUES %s",
		tableName,
		strings.Join(embeddingPlaceholders, ", "),
	)
	if _, err := tx.Exec(embeddingQuery, embeddingArgs...); err != nil {
		vs.logger.Error("failed to write vectors batch", "error", err, "batch_size", len(rows))
		return err
	}
	// Build batch insert for FTS table
	ftsPlaceholders := make([]string, 0, len(rows))
	ftsArgs := make([]any, 0, len(rows)*4)
	embeddingSize := len(rows[0].Embeddings)
	for _, row := range rows {
		ftsPlaceholders = append(ftsPlaceholders, "(?, ?, ?, ?)")
		ftsArgs = append(ftsArgs, row.Slug, row.RawText, row.FileName, embeddingSize)
	}
	ftsQuery := "INSERT INTO fts_embeddings (slug, raw_text, filename, embedding_size) VALUES " +
		strings.Join(ftsPlaceholders, ", ")
	if _, err := tx.Exec(ftsQuery, ftsArgs...); err != nil {
		vs.logger.Error("failed to write FTS batch", "error", err, "batch_size", len(rows))
		return err
	}
	err = tx.Commit()
	if err != nil {
		vs.logger.Error("failed to commit transaction", "error", err)
		return err
	}
	vs.logger.Debug("wrote vectors batch", "batch_size", len(rows))
	return nil
}

// getTableName determines which table to use based on embedding size
func (vs *VectorStorage) getTableName(emb []float32) (string, error) {
	size := len(emb)

	// Check if we support this embedding size
	supportedSizes := map[int]bool{
		384:  true,
		768:  true,
		1024: true,
		1536: true,
		2048: true,
		3072: true,
		4096: true,
		5120: true,
	}
	if supportedSizes[size] {
		return fmt.Sprintf("embeddings_%d", size), nil
	}
	return "", fmt.Errorf("no table for embedding size of %d", size)
}

// SearchClosest finds vectors closest to the query vector using efficient cosine similarity calculation
func (vs *VectorStorage) SearchClosest(query []float32, limit int) ([]models.VectorRow, error) {
	if limit <= 0 {
		limit = 10
	}
	tableName, err := vs.getTableName(query)
	if err != nil {
		return nil, err
	}
	querySQL := "SELECT embeddings, slug, raw_text, filename FROM " + tableName
	rows, err := vs.sqlxDB.Query(querySQL)
	if err != nil {
		return nil, err
	}
	defer rows.Close()
	type SearchResult struct {
		vector   models.VectorRow
		distance float32
	}
	var topResults []SearchResult
	for rows.Next() {
		var (
			embeddingsBlob          []byte
			slug, rawText, fileName string
		)

		if err := rows.Scan(&embeddingsBlob, &slug, &rawText, &fileName); err != nil {
			vs.logger.Error("failed to scan row", "error", err)
			continue
		}
		storedEmbeddings := DeserializeVector(embeddingsBlob)
		similarity := cosineSimilarity(query, storedEmbeddings)
		distance := 1 - similarity

		result := SearchResult{
			vector: models.VectorRow{
				Embeddings: storedEmbeddings,
				Slug:       slug,
				RawText:    rawText,
				FileName:   fileName,
			},
			distance: distance,
		}

		topResults = append(topResults, result)
		sort.Slice(topResults, func(i, j int) bool {
			return topResults[i].distance < topResults[j].distance
		})
		if len(topResults) > limit {
			topResults = topResults[:limit]
		}
	}
	results := make([]models.VectorRow, 0, len(topResults))
	for _, result := range topResults {
		result.vector.Distance = result.distance
		results = append(results, result.vector)
	}
	return results, nil
}

// GetVectorBySlug retrieves a vector row by its slug
func (vs *VectorStorage) GetVectorBySlug(slug string) (*models.VectorRow, error) {
	embeddingSizes := []int{384, 768, 1024, 1536, 2048, 3072, 4096, 5120}
	for _, size := range embeddingSizes {
		table := fmt.Sprintf("embeddings_%d", size)
		query := fmt.Sprintf("SELECT embeddings, slug, raw_text, filename FROM %s WHERE slug = ?", table)
		row := vs.sqlxDB.QueryRow(query, slug)
		var (
			embeddingsBlob                   []byte
			retrievedSlug, rawText, fileName string
		)
		if err := row.Scan(&embeddingsBlob, &retrievedSlug, &rawText, &fileName); err != nil {
			// No row in this table, continue to next size
			continue
		}
		storedEmbeddings := DeserializeVector(embeddingsBlob)
		return &models.VectorRow{
			Embeddings: storedEmbeddings,
			Slug:       retrievedSlug,
			RawText:    rawText,
			FileName:   fileName,
		}, nil
	}
	return nil, fmt.Errorf("vector with slug %s not found", slug)
}

// SearchKeyword performs full-text search using FTS5
func (vs *VectorStorage) SearchKeyword(query string, limit int) ([]models.VectorRow, error) {
	// Use FTS5 bm25 ranking. bm25 returns negative values where more negative is better.
	// We'll order by bm25 (ascending) and limit.
	ftsQuery := `SELECT slug, raw_text, filename, bm25(fts_embeddings) as score 
				 FROM fts_embeddings 
				 WHERE fts_embeddings MATCH ? 
				 ORDER BY score 
				 LIMIT ?`

	// Try original query first
	rows, err := vs.sqlxDB.Query(ftsQuery, query, limit)
	if err != nil {
		return nil, fmt.Errorf("FTS search failed: %w", err)
	}
	results, err := vs.scanRows(rows)
	rows.Close()
	if err != nil {
		return nil, err
	}

	// If no results and query contains multiple terms, try OR fallback
	if len(results) == 0 && strings.Contains(query, " ") && !strings.Contains(strings.ToUpper(query), " OR ") {
		// Build OR query: term1 OR term2 OR term3
		terms := strings.Fields(query)
		if len(terms) > 1 {
			orQuery := strings.Join(terms, " OR ")
			rows, err := vs.sqlxDB.Query(ftsQuery, orQuery, limit)
			if err != nil {
				// Return original empty results rather than error
				return results, nil
			}
			orResults, err := vs.scanRows(rows)
			rows.Close()
			if err == nil {
				results = orResults
			}
		}
	}
	return results, nil
}

// scanRows converts SQL rows to VectorRow slice
func (vs *VectorStorage) scanRows(rows *sql.Rows) ([]models.VectorRow, error) {
	var results []models.VectorRow
	for rows.Next() {
		var slug, rawText, fileName string
		var score float64
		if err := rows.Scan(&slug, &rawText, &fileName, &score); err != nil {
			vs.logger.Error("failed to scan FTS row", "error", err)
			continue
		}
		// Convert BM25 score to distance-like metric (lower is better)
		// BM25 is negative, more negative is better. Keep as negative.
		distance := float32(score) // Keep negative, more negative is better
		// No clamping needed; negative distances are fine
		results = append(results, models.VectorRow{
			Slug:     slug,
			RawText:  rawText,
			FileName: fileName,
			Distance: distance,
		})
	}
	return results, nil
}

// ListFiles returns a list of all loaded files
func (vs *VectorStorage) ListFiles() ([]string, error) {
	fileLists := make([][]string, 0)
	// Query all supported tables and combine results
	embeddingSizes := []int{384, 768, 1024, 1536, 2048, 3072, 4096, 5120}
	for _, size := range embeddingSizes {
		table := fmt.Sprintf("embeddings_%d", size)
		query := "SELECT DISTINCT filename FROM " + table
		rows, err := vs.sqlxDB.Query(query)
		if err != nil {
			// Continue if one table doesn't exist
			continue
		}

		var files []string
		for rows.Next() {
			var filename string
			if err := rows.Scan(&filename); err != nil {
				continue
			}
			files = append(files, filename)
		}
		rows.Close()

		fileLists = append(fileLists, files)
	}

	// Combine and deduplicate
	fileSet := make(map[string]bool)
	var allFiles []string
	for _, files := range fileLists {
		for _, file := range files {
			if !fileSet[file] {
				fileSet[file] = true
				allFiles = append(allFiles, file)
			}
		}
	}
	return allFiles, nil
}

// RemoveEmbByFileName removes all embeddings associated with a specific filename
func (vs *VectorStorage) RemoveEmbByFileName(filename string) error {
	var errors []string
	// Delete from FTS table first
	if _, err := vs.sqlxDB.Exec("DELETE FROM fts_embeddings WHERE filename = ?", filename); err != nil {
		errors = append(errors, err.Error())
	}
	embeddingSizes := []int{384, 768, 1024, 1536, 2048, 3072, 4096, 5120}
	for _, size := range embeddingSizes {
		table := fmt.Sprintf("embeddings_%d", size)
		query := fmt.Sprintf("DELETE FROM %s WHERE filename = ?", table)
		if _, err := vs.sqlxDB.Exec(query, filename); err != nil {
			errors = append(errors, err.Error())
		}
	}
	if len(errors) > 0 {
		return fmt.Errorf("errors occurred: %s", strings.Join(errors, "; "))
	}
	return nil
}

// cosineSimilarity calculates the cosine similarity between two vectors
func cosineSimilarity(a, b []float32) float32 {
	if len(a) != len(b) {
		return 0.0
	}
	var dotProduct, normA, normB float32
	for i := 0; i < len(a); i++ {
		dotProduct += a[i] * b[i]
		normA += a[i] * a[i]
		normB += b[i] * b[i]
	}
	if normA == 0 || normB == 0 {
		return 0.0
	}
	return dotProduct / (sqrt(normA) * sqrt(normB))
}

// sqrt returns the square root of a float32
func sqrt(f float32) float32 {
	// A simple implementation of square root using Newton's method
	if f == 0 {
		return 0
	}
	guess := f / 2
	for i := 0; i < 10; i++ { // 10 iterations should be enough for good precision
		guess = (guess + f/guess) / 2
	}
	return guess
}